Difference between revisions of "QCOutputFormat"
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| − | + | = QCReport Format = | |
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| + | == Yellow Box == | ||
| + | Column 1: Lane #/Sample id <br> | ||
| + | Column 2: Total # of unique reads (i.e. if a read is repeated in the dataset, it is not counted)<br> | ||
| + | Column 3: Total # of unique reads AFTER FILTERING (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | Column 4: Total # of reads in the dataset<br> | ||
| + | Column 5: Total # of reads IN FILTERED READS (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | |||
| + | == Green Box == | ||
| + | Column 1: Lane #/Sample id<br> | ||
| + | Column 2: Type of Dataset (filtered or not) (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | Column 3: Total # of reads in the dataset with Tag/Linker <br> | ||
| + | Column 4: PERCENT Total # of reads in the dataset with Tag/Linker <br> | ||
| + | Column 5: Unique # of reads in the dataset with Tag/Linker (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | Column 5: PERCENT Unique # of reads in the dataset with Tag/Linker (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | |||
| + | == Orange Box == | ||
| + | Column 1: Lane #/Sample id<br> | ||
| + | Column 2: Total # of Adaptor Reads<br> | ||
| + | Column 3: PERCENT Total # of Adaptor Reads<br> | ||
| + | Column 4: Total # of PolyA Reads<br> | ||
| + | Column 5: PERCENT Total # of PolyA Reads<br> | ||
| + | |||
| + | == Purple Box == | ||
| + | Column 1: Lane #/Sample id<br> | ||
| + | Column 2: Type of Dataset (filtered or not) (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | Column 3: Percentage of bases with a quality score of atleast 20 (i.e. the probability of base call being incorrect is 1 in a 100)<br> | ||
| + | |||
| + | == Purple Box == | ||
| + | Column 1: Lane #/Sample id<br> | ||
| + | Column 2: Type of Dataset (filtered or not) (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)<br> | ||
| + | Column 3 and further: Percentage of bases with a quality score of atleast 20 in that cycle/position.<br> | ||
Revision as of 15:23, 19 May 2009
Contents
QCReport Format
 |
Yellow Box
Column 1: Lane #/Sample id
Column 2: Total # of unique reads (i.e. if a read is repeated in the dataset, it is not counted)
Column 3: Total # of unique reads AFTER FILTERING (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Column 4: Total # of reads in the dataset
Column 5: Total # of reads IN FILTERED READS (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Green Box
Column 1: Lane #/Sample id
Column 2: Type of Dataset (filtered or not) (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Column 3: Total # of reads in the dataset with Tag/Linker
Column 4: PERCENT Total # of reads in the dataset with Tag/Linker
Column 5: Unique # of reads in the dataset with Tag/Linker (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Column 5: PERCENT Unique # of reads in the dataset with Tag/Linker (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Orange Box
Column 1: Lane #/Sample id
Column 2: Total # of Adaptor Reads
Column 3: PERCENT Total # of Adaptor Reads
Column 4: Total # of PolyA Reads
Column 5: PERCENT Total # of PolyA Reads
Purple Box
Column 1: Lane #/Sample id
Column 2: Type of Dataset (filtered or not) (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Column 3: Percentage of bases with a quality score of atleast 20 (i.e. the probability of base call being incorrect is 1 in a 100)
Purple Box
Column 1: Lane #/Sample id
Column 2: Type of Dataset (filtered or not) (Please refer to the Solexa Sample Processing Details OR FAQ for questions on filtering)
Column 3 and further: Percentage of bases with a quality score of atleast 20 in that cycle/position.
