Pricing

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Prices quoted are for Whitehead Institute/MIT only. In order to cover additional costs associated with providing outside service, non-WI/MIT institutions should add 30% to the list price.


Illumina Sequencing

There are two options for Illumina sequencing. HiSeq "Standard" and HiSeq "Rapid".

In Standard mode (a.k.a. "High Output" mode) the HiSeq typically yields 120-150 million reads per lane. Standard mode require 7 full lanes of samples before sequencing can proceed and takes about 1 day for every 25 bases of read length. Note: You do not need to fill out a full flow cell yourself, we will group you with other samples to fill out a run.

In "Rapid" mode, individual samples can be sequenced much more quickly without the need to fill out full flow cells. Read lengths in Rapid mode are also longer, up to 250x250 and can be completed in a day or two compared to up to 10 days in standard mode.

Prices include basic data processing including base calls, quality scores and alignment. Sequencing pricing for HiSeq in standard mode are based on 7 samples per flow-cell plus a control lane.

Please visit the Sequencing Services page for sample submission instructions and more information about library prep services.

HiSeq (Std)

Item Unit Price Per Unit Notes
HiSeq - 40 bp Single Read Lane $1,140 avg 120-150 million reads
HiSeq - 40x40 Paired End Lane $1,710 avg 120-150 million paired end reads
HiSeq - 75x75 Paired End Lane $2,260 avg 120-150 million paired end reads
HiSeq - 100x100 Paired End Lane $2,700 avg 120-150 million paired end reads
HiSeq - Additional 40 bases Lane $330 Add to above base prices for longer reads


HiSeq (Rapid)

Item Unit Price Per Unit Notes
HiSeqRapid - 50 bp Single Read full flowcell (2 lanes) $1,680 avg ~160-200 million reads
HiSeqRapid - 40 bp Single Read 1 lane $1,140 avg ~80-100 million reads
HiSeqRapid - 50x50 Paired End full flowcell (2 lanes) $2,500 avg ~160-200 million paired end reads
HiSeqRapid - 50x50 Paired End 1 lane $1,500 avg ~80-100 million paired end reads
HiSeqRapid - 100x100 Paired End full flowcell (2 lanes) $3,250 avg ~160-200 million paired end reads
HiSeqRapid - 100x100 Paired End 1 lane $1,850 avg ~80-100 million paired end reads
HiSeqRapid - 250x250 Paired End full flowcell (2 lanes) $5,550 avg ~160-200 million paired end reads
HiSeqRapid - Add DUAL mode full flowcell (2 lanes) $450 ONLY required if running different samples in each lane
HiSeqRapid - Additional 50 bases full flowcell (2 lanes) $500 Add to above base prices for longer reads up to 250x250


Library Prep

Item Unit Price Per Unit Notes
TruSeq ChIP DNA Sample $200
Swift ChIP DNA Sample $200 Optimized for low input ChIP
SMARTer ChIP DNA Sample $200 -
TruSeq Nano gDNA Sample $200 Genomic DNA >100ng
Nextera genomic DNA Sample $200 "Tagmentation" prep from intact gDNA (50ng)
TruSeq Stranded mRNA Sample $200 Basic RNA Expression Analysis
TruSeq Stranded RiboZero Sample $250 Replaces polyA selection with a ribozomal RNA depletion
Clontech UltraLow RNA Sample $300 For low input RNA down to single cell
Clontech Stranded polyA Sample $200 -
Clontech Stranded RiboZero Sample $250 -
Clontech Stranded Total RNA Pico Sample $250 -
Assay for Transposase-Accessible Chromatin (ATAC-Seq) Sample $200 -


Quality Control

Item Unit Price Per Unit Notes
Bioanalyzer Sample $15 Sizing and purity analysis
qPCR Sample $25 Quantification
Sample Multiplexing Sample $10 Mixing samples for multiplex run


Microarray Services

Prices for sample processing do not include cost of arrays

Affymetrix Array Processing

Item Unit Price Per Unit Notes
Full Service Expression Analysis - 3'IVT or WT Sample $325 Not including cost of Array
Contact GTC or Affymetrix for array prices Array $150-$400 Array only



Agilent Array Processing

Item Unit Price Per Unit Notes
Full Service Expression Analysis (Single Channel) Sample $325 Not including cost of array
Full Service Expression Analysis (Two Samples - Dual Channel) Two Samples $525 Not including cost of array
Contact GTC or Agilent for Array pricing Array $$



nCounter Analysis System (NanoString)

Item Unit Price Per Unit Notes
Equipment Use Cartridge $250 12 samples per cartridge
Reagents Cartridge $280.50* *Does NOT include CodeSet
Labor-Hyb Cartridge $150.00 -
Labor-miRNA Sample $25.00 -


Bioanalyzer - RNA, DNA and Protein analysis

Item Unit Price Per Unit Notes
RNA or DNA Sample $15 Pico, Nano, DNA or hsDNA


Quantitative PCR - QuantStudio 6

Item Unit Price Per Unit Notes
SYBR green / Taq Man Master mix uL 7 cents -
Optical Plate Plate $7.00 -
Equipment Time (2 hour time block) Plate $30.00 Sign-up Required