Eland
From Genome Technology Core (GTC) wiki - Sequencing and Microarray
ELAND - E fficient L arge-Scale A lignment of N ucleotide D atabases - is an alignment tool integrated in Illumina-Solexa data processing package, can do ungapped alignment for reads with size up to 32 bp (Cox, unpublished). Although the core program is a binary executable but we have built certain wrapper scripts to be able to run the ELAND program independently of the pipeline.
