Data Analysis Resources
From Genome Technology Core (GTC) wiki - Sequencing and Microarray
The following softwares are available at Whitehead Institute for Data Analysis (More to be added soon):
Bioconductor Free
Bioconductor is an open source and open development software project for the analysis and comprehension of genomic data. Bioconductor is primarily based on the R programming language but we do accept contributions in any programming language. It can read the genepix as well as agilent feature extraction and affymetrix data files directly. A certain level of programming experience is required.
BaRC analysis tools Whitehead Only
A set of web based tools for general analysis, sequence extraction, annotation (limited species), Homology and functional analysis
