Pricing
Prices quoted are for Whitehead Institute/MIT only. In order to cover additional costs associated with providing outside service, non-WI/MIT institutions should add 30% to the list price.
Contents
Illumina Sequencing
There are two options for Illumina sequencing. HiSeq "Standard" and HiSeq "Rapid".
Prices include basic data processing including base calls, quality scores and alignment (if requested).
Please visit the Sequencing Services page for sample submission instructions and more information about library prep services.
HiSeq (Std a.k.a. "High Output" mode) -- At least 150-200 million reads per lane
Standard mode require 7 full lanes of samples before sequencing can proceed and takes about 1 day for every 25 bases of read length. Note: You do not need to fill out a full flow cell yourself, we will group you with other samples to fill out a run.
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| HiSeq - 40 bp Single Read | Lane | $1,140 | |
| HiSeq - 26x40 10X | Lane | $1,300 | ONLY FOR 10X LIBRARIES |
| HiSeq - 40x40 Paired End | Lane | $1,710 | |
| HiSeq - 75x75 Paired End | Lane | $2,260 | |
| HiSeq - 100x100 Paired End | Lane | $2,700 | |
| HiSeq - Additional 40 bases | Lane | $330 | Add to above base prices for longer reads |
HiSeq (Rapid) -- At least 100 to 150 million reads per lane (Two lanes per Flow Cell)
In "Rapid" mode, individual samples can be sequenced much more quickly without the need to fill out full flow cells. Read lengths in Rapid mode are also longer, up to 250x250, and complete more quickly. For example - a 100x100 run in Rapid mode completes in 2-3 days vs up to 7 days in Standard mode.
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| HiSeqRapid - 50 bp Single Read | full flowcell (2 lanes) | $1,680 | |
| HiSeqRapid - 40 bp Single Read | 1 lane | $1,140 | |
| HiSeqRapid - 26x40 10X | full flowcell (2 lanes) | $2,400 | ONLY FOR 10X LIBRARIES |
| HiSeqRapid - 50x50 Paired End | full flowcell (2 lanes) | $2,500 | |
| HiSeqRapid - 50x50 Paired End | 1 lane | $1,500 | |
| HiSeqRapid - 100x100 Paired End | full flowcell (2 lanes) | $3,250 | |
| HiSeqRapid - 100x100 Paired End | 1 lane | $1,850 | |
| HiSeqRapid - 250x250 Paired End | full flowcell (2 lanes) | $5,550 | |
| HiSeqRapid - Add DUAL mode | full flowcell (2 lanes) | $450 | ONLY required if running different samples in each lane |
| HiSeqRapid - Additional 50 bases | full flowcell (2 lanes) | $500 | Add to above base prices for longer reads up to 250x250 |
Library Prep
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| Swift ChIP DNA (ChIP-Seq) | Sample | $200 | Optimized for low input ChIP |
| TruSeq Nano gDNA (Genomic) | Sample | $200 | Genomic DNA >100ng |
| Nextera gDNA (Genomic, ATAC-Seq) | Sample | $200 | "Tagmentation" prep from intact gDNA (50ng) |
| TruSeq Stranded mRNA (RNA-Seq) | Sample | $200 | Basic RNA Expression Analysis |
| TruSeq Stranded RiboZero (RNA-Seq) | Sample | $250 | Replaces polyA selection with a ribozomal RNA depletion |
| Clontech UltraLow RNA (RNA-Seq) | Sample | $300 | For low input RNA down to single cell |
| Clontech Stranded Total RNA Pico (RNA-Seq) | Sample | $250 | - |
| NEBNext Small RNA (microRNA) | Sample | $200 | - |
| 10X Single Cell 3’ Solution Library prep (RNA-Seq) http://jura.wi.mit.edu/genomecorewiki/index.php/SingleCell | Sample | $1800 | Sorting and library prep for up to 10,000 cells |
| SMART-seq v2 Library prep (RNA-Seq) http://jura.wi.mit.edu/genomecorewiki/index.php/SingleCell | 96-well Plate | $2400 |
Quality Control
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| Bioanalyzer | Sample | $15 | Sizing and purity analysis |
| qPCR | Sample | $25 | Quantification |
| Sample Multiplexing | Sample | $10 | Mixing samples for multiplex run |
Microarray Services
Prices for sample processing do not include cost of arrays
Affymetrix Array Processing
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| Full Service Expression Analysis - 3'IVT or WT | Sample | $325 | Not including cost of Array |
| Contact GTC or Affymetrix for array prices | Array | $150-$400 | Array only |
Agilent Array Processing
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| Full Service Expression Analysis (Single Channel) | Sample | $325 | Not including cost of array |
| Full Service Expression Analysis (Two Samples - Dual Channel) | Two Samples | $525 | Not including cost of array |
| Contact GTC or Agilent for Array pricing | Array | $$ |
nCounter Analysis System (NanoString)
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| Equipment Use | Cartridge | $250 | 12 samples per cartridge |
| Reagents | Cartridge | $280.50* | *Does NOT include CodeSet |
| Labor-Hyb | Cartridge | $150.00 | - |
| Labor-miRNA | Sample | $25.00 | - |
Bioanalyzer - RNA, DNA and Protein analysis
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| RNA or DNA | Sample | $15 | Pico, Nano, DNA or hsDNA |
Quantitative PCR - QuantStudio 6
| Item | Unit | Price Per Unit | Notes |
|---|---|---|---|
| SYBR green / Taq Man Master mix | uL | 7 cents | - |
| Optical Plate | Plate | $7.00 | - |
| Equipment Time (2 hour time block) | Plate | $30.00 | Sign-up Required |
