Difference between revisions of "Dataanalysis"
From Genome Technology Core (GTC) wiki - Sequencing and Microarray
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+ | {| border="1" | ||
+ | |+ MIT Software | ||
+ | ! Program !! Description !! Platform | ||
+ | |- | ||
+ | ! GSEA | ||
+ | | Determines if a given set of genes shows differences between two biological states || JAVA | ||
+ | |- | ||
+ | ! GeneCluster | ||
+ | |Self-organizing maps | ||
+ | |JAVA, Windows NT | ||
+ | |- | ||
+ | ! Connectivity Map | ||
+ | | Uses pattern-matching algorithms to enable discovery of functional connections between drugs, genes, and diseases | ||
+ | |Web | ||
+ | |- | ||
+ | ! GeneCruiser | ||
+ | | Annotation tool for Affymetrix probes | ||
+ | |Web | ||
+ | |} | ||
+ | |||
{| border="1" | {| border="1" | ||
|+ Free Software from other sources | |+ Free Software from other sources |
Latest revision as of 15:10, 2 November 2007
Program | Description | Platform |
---|---|---|
GSEA | Determines if a given set of genes shows differences between two biological states | JAVA |
GeneCluster | Self-organizing maps | JAVA, Windows NT |
Connectivity Map | Uses pattern-matching algorithms to enable discovery of functional connections between drugs, genes, and diseases | Web |
GeneCruiser | Annotation tool for Affymetrix probes | Web |
Program | Description | Provider | Platform |
---|---|---|---|
Array Designer | Tool assisting in primer design for microarray construction | Premier Biosoft International | JAVA |
ArrayMiner | Set of analysis tools using advanced algorithms to reveal the true structure of gene expression data | Optimal Design, Sprl. | Windows/MacOS |
ArrayViewer | Identification of statistically significant hybridization signals | National Human Genome Research Institute | JAVA |
BAGEL | Bayesian Analysis of Gene Expression Levels: a program for the statistical analysis of spotted microarray data. | University of Connecticut | MacOS, Windows, Linux |
BAMarray | Bayesian Analysis of Variance for Microarrays - detect differentially expressed genes from multigroup microarray data | Case University | Windows, Linux |
BASE | Microarray database and analysis platform | Lund University | Web |
Cluster 3.0 | An enhanced version of Mike Eisen's Cluster | University of Tokyo, Japan | UNIX, Linux, MacOS, Windows |
DNA arrays analysis tools | Hierarchical clustering, Self Organizing Maps and more | Spanish National Cancer Center, Bioinformatics Unit | Web |
Expression Profiler | Analysis & clustering of gene expression data | European Bioinformatics Institute (EBI) | Web |
GEDA | Gene expression data analysis and simulation tools, offering a variety of options for processing and analyzing results. | University of Pittsburgh and UPMC | Web |
GenMAPP | Tools for visualizing data from gene expression experiments in the context of biological pathways. | Conklin lab; Gladstone Institute & the UCSF | Windows |
GeneX | Gene Expression Database : integrated toolset for data analysis and comparison | National Center for Genome Resources | Windows, Linux, SunOS/Solaris |
TIGR MultiExperiment Viewer | Analysis and Visualization of Microarray Data | TIGR | JAVA |
TreeArrange and Treeps | Software for displaying and manipulating hierarchical clustered data | University of Waterloo, Canada | Linux, Unix, Windows |