Difference between revisions of "General Links Resources"

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[http://www.nature.com/nmeth/focus/moy2007/index.html| Nature Methods Focus: Next Generation Sequencing]
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[http://seqanswers.com/ SEQanswers] An information resource and user-driven community focused on all aspects of next-generation genomics.
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Nature Methods' Method of the Year 2007 goes to next-generation sequencing. This series of articles showcase how these novel sequencing methods came into their own in 2007 and the incredible impact they promise to have in a variety of research applications. The Methods to Watch feature provide a glimpse and a wish list for future Methods of the Year.  
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[http://www.ncbi.nlm.nih.gov/geo NCBI GEO]
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[http://www.nature.com/reviews/focus/microarrays/index.html| Nature Reviews journals web focus on Microarrays]
 
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Nature Reviews journals web focus on Microarrays - a selection of published Reviews, Perspectives and Highlights on this topic.
 
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[http://www.gene-chips.com/| Genechip]
 
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Simple, printer-friendly site where you'll find the basics on DNA microarray technology and a list of academic and industrial links related to this technology
 
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[http://www.mged.org/index.html| Microarray and Gene Expression Data]
 
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The Microarray and Gene Expression Data (MGED) Society is an international organization of biologists, computer scientists, and data analysts that aims to facilitate the sharing of data generated using the microarray and other functional genomics technologies for a variety of applications including expression profiling. The scope of MGED includes data generated using any technology when applied to genome-scale studies of gene expression, binding, modification and other related applications.
 
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[http://www.ncbi.nlm.nih.gov/geo/| NCBI GEO]
 
 
Gene Expression Omnibus is a gene expression/molecular abundance repository supporting MIAME compliant data submissions, and a curated, online resource for gene expression data browsing, query and retrieval.
 
Gene Expression Omnibus is a gene expression/molecular abundance repository supporting MIAME compliant data submissions, and a curated, online resource for gene expression data browsing, query and retrieval.
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[http://www.ebi.ac.uk/microarray-as/aer/| ArrayExpress]
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[http://www.yeastgenome.org/ Saccharomyces Genome Database (SGD)]
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ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with MGED recommendations. The ArrayExpress Data Warehouse stores gene-indexed expression profiles from a curated subset of experiments in the repository. Public data in ArrayExpress are made available for browsing and querying on experiment properties, submitter, species, etc. Queries return summaries of experiments and complete data, or subsets can be retrieved.
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SGD is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast.
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[http://smd-www.stanford.edu/| Stanford MicroArray Database]
 
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There may be charges associated with using SMD. The charges depend on the number of uploaded arrays within a year and they are slightly different depending on whether the lab loading them is at Stanford or at a different institution.
 

Latest revision as of 13:37, 16 April 2020

SEQanswers An information resource and user-driven community focused on all aspects of next-generation genomics.

NCBI GEO Gene Expression Omnibus is a gene expression/molecular abundance repository supporting MIAME compliant data submissions, and a curated, online resource for gene expression data browsing, query and retrieval.

Saccharomyces Genome Database (SGD) SGD is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast.

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