Difference between revisions of "Pricing"

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= Illumina Sequencing =
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= Sequencing =
 
 
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Sequencing pricing based on 7 samples per flow cell plus a control lane. Library preparation is not included in sequencing cost. Basic data analysis pipeline includes base calling and quality scores. Genome alignment and other analysis is available for an additional cost.
+
There are three options for Illumina sequencing. NovaSeq and MiSeq.
 +
 
 +
Prices include basic data processing including base calls, quality scores and alignment (if requested).  
 +
 
 +
Please visit the [http://gtc.wi.mit.edu/genomecorewiki/index.php/Sequencing Sequencing Services] page for sample submission instructions and more information about library prep services.
 +
 
 +
== Short Read (Single lane submissions accepted for standard read lengths) ==
 +
 
 +
=== Illumina NovaSeq ===
 +
 
 +
{| style="text-align: center; width:1000px; font-size:120%; border:3px dashed red;" border="1" align="center"
 +
|-
 +
| Item || Read Length || Unit || Price Per Unit || Notes
 +
|-
 +
|rowspan="4"|NovaSeqSP
 +
| 100 Single End or 50x50 Paired-End
 +
|rowspan="4"| 1 lane
 +
|$1,850
 +
|rowspan="4"|~650–800 million reads per flowcell <br>~325-400 million reads per lane <br>(x2 for Paired-End)
 +
|-
 +
| 200 Single End or 100x100 Paired-End
 +
|$2,245
 +
|-
 +
| 300 Single End or 150x150 Paired-End
 +
|$2,620
 +
|-
 +
| 500 Single End or 250x250 Paired-End
 +
|$3,510
 +
|-
 +
|rowspan="3"|NovaSeqS1
 +
| 100 Single End or 50x50 Paired-End
 +
|rowspan="3"|1 lane
 +
|$2,920
 +
|rowspan="3"|~1.3–1.6 billion reads per flowcell <br> ~650–800 million reads per lane <br> (x2 for Paired-End)
 +
|-
 +
| 200 Single End or 100x100 Paired-End
 +
|$3,730
 +
|-
 +
| 300 Single End or 150x150 Paired-End
 +
|$4,065
 +
|-
 +
|rowspan="3"|NovaSeqS2
 +
| 100 Single End or 50x50 Paired-End
 +
|rowspan="3"|1 lane
 +
|$5,200
 +
|rowspan="3"|~3.3–4.1 billion reads per flowcell <br> ~1.65-2.05 billion reads per lane <br> (x2 for Paired-End)
 +
|-
 +
| 200 Single End or 100x100 Paired-End
 +
|$6,480
 +
|-
 +
| 300 Single End or 150x150 Paired-End
 +
|$6,750
 +
|-
 +
|rowspan="2"|NovaSeqS4
 +
| 50 Single End
 +
|rowspan="2"|1 lane
 +
|$3,780
 +
|rowspan="2"|~8-10 billion reads per flowcell <br> ~2-2.5 billion reads per lane <br> (x2 for Paired-End)
 +
|-
 +
| 300 Single End or 150x150 Paired-End
 +
|$5,400
 +
|-
 +
|}
 +
 
 +
 
 +
<br>
 +
 
 +
=== Element AVITI ===
 
{{PricingHeader}}
 
{{PricingHeader}}
−
{{PricingRow|Sequencing - 36 bp Single Read|Sample|~$950|Cluster, Sequence, Pipeline}}
+
{{PricingRow|150 Single End or 75x75 Paired End|Lane|$1,000| 400 million reads}}
−
{{PricingRow|Sequencing - 72 bp Single Read|Sample|~$1,200|Cluster, Sequence, Pipeline}}
+
{{PricingRow|300 Single End or 150x150 Paired End|Lane|$1,375| 400 million reads}}
−
{{PricingRow|Sequencing - 36 bp Paired-End Reads|Sample|~$1,600|Cluster, Sequence, Pipeline}}
+
{{PricingLastRow|300x300 Paired End|Flowcell|$3,500| 300 million reads}}
−
{{PricingRow|Sequencing - 72 bp Paired-End Reads|Sample|~$2,200|Cluster, Sequence, Pipeline}}
 
−
{{PricingLastRow|Genome Alignment|Sample|$50|-}}
 
−
{{PricingLastRow|Other analysis|Sample|Inquire|-}}
 
−
{{PricingRow|Sample prep - ChIP Seq|Sample|Inquire|-}}
 
−
{{PricingRow|Sample prep - DGE|Sample|Inquire|-}}
 
  
  
 
<br>
 
<br>
 +
 +
=== Illumina MiSeq ===
 +
{{PricingHeader}}
 +
{{PricingRow|MiSeq v2 70 Single End or 30x30 Paired End|Flowcell|$1,320| 10 million reads}}
 +
{{PricingRow|MiSeq v3 150 Single End or 75x75 Paired End|Flowcell|$1,430| 20 million reads}}
 +
{{PricingRow|MiSeq v2 300 Single End or 150x150 Paired End|Flowcell|$1,595| 10 million reads}}
 +
{{PricingRow|MiSeq v2 500 Single End or 250x250 Paired End|Flowcell|$1,760| 10 million reads}}
 +
{{PricingLastRow|MiSeq v3 600 Single End or 300x300 Paired End|Flowcell|$2,200| 20 million reads}}
 +
 
<br>
 
<br>
  
−
= Microarray Services =
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== Long Read ==
  
−
Prices for sample processing do not include cost of arrays
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=== Nanopore (P2 Solo/promethION) ===
 +
{{PricingHeader}}
 +
{{PricingLastRow|Nanopore|Flowcell|$1200| Upto 50 to 70GB data per flow cell}}
 +
 
 +
<br>
  
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== Affymetrix Array Processing==
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=== Pacbio ===
 
{{PricingHeader}}
 
{{PricingHeader}}
−
{{PricingRow|Affymetrix GeneChip Expression Array|Array|~$400|Array only}}
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{{PricingLastRow|Pacbio SMRTCell 25 Million|Run|$2900|Around 6 million reads, outsourcing to sister facilities to enable access to the REVIO}}
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{{PricingRow|Standard Expression Processing|Sample|~$500|>5ug total RNA}}
 
−
{{PricingRow|Small Sample Expression Processing|Sample|~$650|10-100ng total RNA}}
 
−
{{PricingLastRow|Prokaryotic Protocol|Sample|~$450|-}}
 
  
 
<br>
 
<br>
−
== Agilent Array Processing==
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−
{{PricingHeader}}
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= RNA Library Prep =
−
{{PricingRow|Agilent Expression Array 4x44k multiplex|"Slide (array)"|~$700/slide|($175/array)|"Arrays only 4 arrays per slide"}}
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=== Standard (Manual) ===
−
{{PricingRow|Standard Expression Processing|Sample|~$350|One sample, single channel}}
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{{PricingHeader}}
−
{{PricingLastRow|ChIP-on-Chip Processing|Sample|~$650|Two samples, dual channel}}
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{{PricingRow|IDT xGen RNA, Std or Rapid (formerly Swift), samples 1-12|Sample|$200|}}
 +
{{PricingRow|IDT xGen RNA, Std or Rapid (formerly Swift), samples 13+|Sample|$150|}}
 +
{{PricingRow|Watchmaker QiaSeq FastSelect Ribodepletion, samples 1-12|Sample|$200|}}
 +
{{PricingRow|Watchmaker QiaSeq FastSelect Ribodepletion, samples 13+|Sample|$150|}}
 +
{{PricingRow|Watchmaker mRNA, samples 1-12|Sample|$150|}}
 +
{{PricingRow|Watchmaker mRNA, samples 13+|Sample|$100|}}
 +
{{PricingRow|Agilent SureSelect All Exon|Sample|$650|}}
 +
{{PricingLastRow|NEBNext Small RNA|Sample|$200|}}
  
 
<br>
 
<br>
  
−
== Custom Array Manufacturing==
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 +
=== Low Input (Manual) ===
 
{{PricingHeader}}
 
{{PricingHeader}}
−
{{PricingLastRow|Up to 30,000 spots on 100 slides||Inquire|-}}
+
{{PricingLastRow|Clontech SMARTer UltraLow RNA w/ NexteraXT|Sample|$300|}}
  
 
<br>
 
<br>
  
−
= Bioanalyzer - RNA, DNA and Protein analysis =
+
 
 +
=== Highthroughput (96 well Plate Based) ===
 +
 
 +
{| style="text-align: center; width:1000px; font-size:120%; border:3px dashed red;" border="1" align="center"
 +
|-
 +
| Item || Unit || Price Per Unit || Notes
 +
|-
 +
|rowspan="3"|HT mRNA library prep (IDT xGen RNA)
 +
| 48 Samples
 +
|$3600
 +
|rowspan="3" width=50%| Samples should be pre-aliquoted (in Eppendorf twin.tec semi-skirted 96 well plate), normalized (100 and 500 ng total), in a volume of 50 ul.
 +
Intake QC or quantification only by special arrangement at an additional charge. please inquire if needed.
 +
 
 +
Libraries are pooled by FA quantification, expect variation in read balancing. 
 +
|-
 +
| 49-72 samples
 +
|$5400
 +
|-
 +
| 96 samples
 +
|$7200
 +
|-
 +
|}
 +
 
 +
<br>
 +
 
 +
= Single Cell (10X and others) =
 
{{PricingHeader}}
 
{{PricingHeader}}
−
{{PricingLastRow|Bioanalyzer run|Run|$150|Up to 12 samples per run}}
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{{PricingRow|10X Single Cell 3’ GEX|sample|$2560|}}
 +
{{PricingRow|10X Single Cell 5’ GEX|sample|$2560|}}
 +
{{PricingRow|10X VDJ Add-on|sample|$230|Can be added onto the 10X 5' GEX Only}}
 +
{{PricingRow|10X CRISPR Add-on|sample|$280|Can be added onto the 10X 5' GEX Only}}
 +
{{PricingRow|10X Antibody/CellPlex/MultiSeq Add-on|sample|$140|}}
 +
{{PricingRow|10X Multiome Assay (ATAC + 3')|sample|$4200|}}
 +
{{PricingRow|10X Flex (Fixed Cell)|sample|$2800|Human and Mouse Only}}
 +
{{PricingRow|Plexwell Rapid Single Cell - one 96 well plate|96 well plate|$5060|1 cell per well}}
 +
{{PricingLastRow|Plexwell Rapid Single Cell - 1 of 4 96 well plates|96 well plate|$3800|1 cell per well}}
  
 
<br>
 
<br>
−
= Quantitative PCR - ABI Prism 7900 =
+
 
 +
= DNA Library Prep =
 
{{PricingHeader}}
 
{{PricingHeader}}
−
{{PricingRow|SYBR green / Taq Man Master mix|uL|6.5 cents|-}}
+
{{PricingRow|Nextera gDNA (Genomic, ATAC-Seq)|sample|$200|"Tagmentation" prep from intact gDNA (50ng)}}
−
{{PricingRow|Optical Plate|Plate|$7.00|-}}
+
{{PricingLastRow|Illumina DNA Prep (Genomic)|sample|$200|Genomic DNA >100ng}}
−
{{PricingLastRow|Equipment Time (2 hour time block)|Plate|$30.00|Sign-up Required}}
 
  
 
<br>
 
<br>
 +
 +
= RNA Isolation =
 +
{{PricingHeader}}
 +
{{PricingRow|[http://genomecore.wi.mit.edu/index.php/rnaextraction RNA-miRNeasy Total RNA Isolation]|sample|$100|}}
 +
{{PricingRow|[http://genomecore.wi.mit.edu/index.php/rnaextraction RNA - MagMax mirVana RNA Isolation]|sample|$30|}}
 +
{{PricingLastRow|[http://genomecore.wi.mit.edu/index.php/rnaextraction RNA - Direct-zol™-96 MagBead RNA Isolation]|sample|$30|}}
 +
 
<br>
 
<br>
−
= Other Services =
+
 
 +
= Quality Control =
 +
{{PricingHeader}}
 +
{{PricingRow|Bioanalyzer/Fragment Analyzer|1 to 20 Samples|$15|Sizing and purity analysis}}
 +
{{PricingRow|Fragment Analyzer (half 96 well plate)|20 to 48 Samples|$300|Sizing and purity analysis}}
 +
{{PricingRow|Fragment Analyzer (Full 96 well plate)|49+ Samples|$500|Sizing and purity analysis}}
 +
{{PricingRow|qPCR|Sample|$25|Quantification}}
 +
{{PricingLastRow|Sample Multiplexing|Sample|$10|Mixing samples for multiplex run}}
 +
 
 
<br>
 
<br>
−
== General Liquid Handling - Biomek FX ==
+
 
 +
= Bioanalyzer - RNA, DNA and Protein analysis =
 
{{PricingHeader}}
 
{{PricingHeader}}
−
{{PricingLastRow|96 Channel or single well hit-picking||Inquire|-}}
+
{{PricingLastRow|RNA or DNA|Sample|$15|Pico, Nano, DNA or hsDNA}}
  
 
<br>
 
<br>
  
−
== Monthly Access Program ==
+
= Quantitative PCR - QuantStudio 6 =
−
Regular users are encouraged to subscribe to our monthly access program that provides unlimited use of general equipment including the nanodrop spectrophotometer, hybridization chambers and ovens, pipettes and some common supplies. The fee is $250/month and covers the entire lab.
+
{{PricingHeader}}
 +
{{PricingRow|SYBR green / Taq Man Master mix|uL|7 cents|-}}
 +
{{PricingRow|Optical Plate|Plate|$7|-}}
 +
{{PricingLastRow|Equipment Time (2 hour time block)|Plate|$50|Sign-up Required}}
 +
 
 +
<br>
 +
 
 +
= Digital PCR =
 +
{{PricingHeader}}
 +
{{PricingLastRow|Equipment Time (2 hour time block)|Plate|$50|Sign-up Required}}

Latest revision as of 11:31, 28 October 2024

Prices quoted are for Whitehead Institute/MIT only. In order to cover additional costs associated with providing outside service, non-WI/MIT institutions should add 30% to the list price.


Sequencing

There are three options for Illumina sequencing. NovaSeq and MiSeq.

Prices include basic data processing including base calls, quality scores and alignment (if requested).

Please visit the Sequencing Services page for sample submission instructions and more information about library prep services.

Short Read (Single lane submissions accepted for standard read lengths)

Illumina NovaSeq

Item Read Length Unit Price Per Unit Notes
NovaSeqSP 100 Single End or 50x50 Paired-End 1 lane $1,850 ~650–800 million reads per flowcell
~325-400 million reads per lane
(x2 for Paired-End)
200 Single End or 100x100 Paired-End $2,245
300 Single End or 150x150 Paired-End $2,620
500 Single End or 250x250 Paired-End $3,510
NovaSeqS1 100 Single End or 50x50 Paired-End 1 lane $2,920 ~1.3–1.6 billion reads per flowcell
~650–800 million reads per lane
(x2 for Paired-End)
200 Single End or 100x100 Paired-End $3,730
300 Single End or 150x150 Paired-End $4,065
NovaSeqS2 100 Single End or 50x50 Paired-End 1 lane $5,200 ~3.3–4.1 billion reads per flowcell
~1.65-2.05 billion reads per lane
(x2 for Paired-End)
200 Single End or 100x100 Paired-End $6,480
300 Single End or 150x150 Paired-End $6,750
NovaSeqS4 50 Single End 1 lane $3,780 ~8-10 billion reads per flowcell
~2-2.5 billion reads per lane
(x2 for Paired-End)
300 Single End or 150x150 Paired-End $5,400



Element AVITI

Item Unit Price Per Unit Notes
150 Single End or 75x75 Paired End Lane $1,000 400 million reads
300 Single End or 150x150 Paired End Lane $1,375 400 million reads
300x300 Paired End Flowcell $3,500 300 million reads



Illumina MiSeq

Item Unit Price Per Unit Notes
MiSeq v2 70 Single End or 30x30 Paired End Flowcell $1,320 10 million reads
MiSeq v3 150 Single End or 75x75 Paired End Flowcell $1,430 20 million reads
MiSeq v2 300 Single End or 150x150 Paired End Flowcell $1,595 10 million reads
MiSeq v2 500 Single End or 250x250 Paired End Flowcell $1,760 10 million reads
MiSeq v3 600 Single End or 300x300 Paired End Flowcell $2,200 20 million reads


Long Read

Nanopore (P2 Solo/promethION)

Item Unit Price Per Unit Notes
Nanopore Flowcell $1200 Upto 50 to 70GB data per flow cell


Pacbio

Item Unit Price Per Unit Notes
Pacbio SMRTCell 25 Million Run $2900 Around 6 million reads, outsourcing to sister facilities to enable access to the REVIO


RNA Library Prep

Standard (Manual)

Item Unit Price Per Unit Notes
IDT xGen RNA, Std or Rapid (formerly Swift), samples 1-12 Sample $200
IDT xGen RNA, Std or Rapid (formerly Swift), samples 13+ Sample $150
Watchmaker QiaSeq FastSelect Ribodepletion, samples 1-12 Sample $200
Watchmaker QiaSeq FastSelect Ribodepletion, samples 13+ Sample $150
Watchmaker mRNA, samples 1-12 Sample $150
Watchmaker mRNA, samples 13+ Sample $100
Agilent SureSelect All Exon Sample $650
NEBNext Small RNA Sample $200



Low Input (Manual)

Item Unit Price Per Unit Notes
Clontech SMARTer UltraLow RNA w/ NexteraXT Sample $300



Highthroughput (96 well Plate Based)

Item Unit Price Per Unit Notes
HT mRNA library prep (IDT xGen RNA) 48 Samples $3600 Samples should be pre-aliquoted (in Eppendorf twin.tec semi-skirted 96 well plate), normalized (100 and 500 ng total), in a volume of 50 ul.

Intake QC or quantification only by special arrangement at an additional charge. please inquire if needed.

Libraries are pooled by FA quantification, expect variation in read balancing. 

49-72 samples $5400
96 samples $7200


Single Cell (10X and others)

Item Unit Price Per Unit Notes
10X Single Cell 3’ GEX sample $2560
10X Single Cell 5’ GEX sample $2560
10X VDJ Add-on sample $230 Can be added onto the 10X 5' GEX Only
10X CRISPR Add-on sample $280 Can be added onto the 10X 5' GEX Only
10X Antibody/CellPlex/MultiSeq Add-on sample $140
10X Multiome Assay (ATAC + 3') sample $4200
10X Flex (Fixed Cell) sample $2800 Human and Mouse Only
Plexwell Rapid Single Cell - one 96 well plate 96 well plate $5060 1 cell per well
Plexwell Rapid Single Cell - 1 of 4 96 well plates 96 well plate $3800 1 cell per well


DNA Library Prep

Item Unit Price Per Unit Notes
Nextera gDNA (Genomic, ATAC-Seq) sample $200 "Tagmentation" prep from intact gDNA (50ng)
Illumina DNA Prep (Genomic) sample $200 Genomic DNA >100ng


RNA Isolation

Item Unit Price Per Unit Notes
RNA-miRNeasy Total RNA Isolation sample $100
RNA - MagMax mirVana RNA Isolation sample $30
RNA - Direct-zol™-96 MagBead RNA Isolation sample $30


Quality Control

Item Unit Price Per Unit Notes
Bioanalyzer/Fragment Analyzer 1 to 20 Samples $15 Sizing and purity analysis
Fragment Analyzer (half 96 well plate) 20 to 48 Samples $300 Sizing and purity analysis
Fragment Analyzer (Full 96 well plate) 49+ Samples $500 Sizing and purity analysis
qPCR Sample $25 Quantification
Sample Multiplexing Sample $10 Mixing samples for multiplex run


Bioanalyzer - RNA, DNA and Protein analysis

Item Unit Price Per Unit Notes
RNA or DNA Sample $15 Pico, Nano, DNA or hsDNA


Quantitative PCR - QuantStudio 6

Item Unit Price Per Unit Notes
SYBR green / Taq Man Master mix uL 7 cents -
Optical Plate Plate $7 -
Equipment Time (2 hour time block) Plate $50 Sign-up Required


Digital PCR

Item Unit Price Per Unit Notes
Equipment Time (2 hour time block) Plate $50 Sign-up Required
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